“Symbiosis, a range of intimate relationships Plants,


“Symbiosis, a range of intimate relationships Plants, animals, and diverse microbes engage in a wide range of interactions that can be characterized as symbiotic, that is, the living together of unlike organisms [1–5]. The Plant-Associated Microbe Gene Ontology (PAMGO) Consortium

[6] has been developing an extensive set of Gene Ontology (GO) [7] terms that describe processes and structures underlying symbiotic interactions between organisms, ranging from mutualists through parasites [8]. This mini-review focuses on the selleck screening library nutrient acquisition BI 2536 supplier strategies of a range of symbiotic organisms. Here “”nutrient”" is defined as any chemical substance required for metabolism or development. GO terms that describe gene products related to nutrient exchange during symbiosis are discussed along with examples of symbioses involving bacteria, protozoans, fungi, animals, oomycetes, algae, and plants. The Gene Ontology The GO is a controlled vocabulary consisting of GO terms that describe gene product attributes in any organism [9]. GO terms are arranged as directed acyclic graphs (DAGs) within three ontologies, “”GO: 0005575 cellular

component”", “”GO: 0008150 biological process”", and “”GO: 0003674 molecular function”". DAGs differ from hierarchies in that each term (child) may be related to more than one less specific term (parent). Three specific relationships among parent and child terms within a DAG are currently recognized by the GO: “”is_a”", “”part_of”", and “”regulates”". For example, “”GO: 0052010 catabolism by symbiont of host cell wall Selleckchem EX 527 cellulose”" Interleukin-2 receptor is a type of “”GO: 0052009 disassembly by symbiont of host cell wall”", and thus these terms would be

connected by the “”is_a”" relationship (for more information on term-term relationships and ontology structure, see [9]). The concept of symbiosis in the Gene Ontology In the GO, the concept of symbiosis is represented by the term “”GO: 0044403 symbiosis, encompassing mutualism through parasitism”", which is defined as: “”An interaction between two organisms living together in more or less intimate association. The term host is usually used for the larger (macro) of the two members of a symbiosis. The smaller (micro) member is called the symbiont organism”" [10]. The various forms of symbiosis include parasitism, in which the association is disadvantageous or destructive to the host organism; mutualism, in which the association is advantageous to both; and commensalism, in which the symbiont benefits while the host is not affected [8]. However, mutualism, parasitism, and commensalism are not discrete categories of interactions but rather a continuum. In fact, the nature of a symbiotic interaction may vary due to developmental changes in the host or symbiont, changes in the biotic or abiotic environment, or variation in host genotype [11]. Correspondingly, the exchange of nutrients between symbiotic partners may be context dependent and may be bidirectional or heavily unidirectional.

Qual Saf Health Care 16:230–234CrossRefPubMed 140 Cusimano MD, K

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Despite its recent arrival on the market of anti-infective

Despite its recent arrival on the market of anti-infective

agents, DAP-resistant mutants have already been reported [9–12]. To prevent the occurrence of resistant mutants (especially in the presence of foreign bodies) [13–16] and to limit the increase in staphylococcal minimum inhibitory concentration (MIC) [17, 18], some authors [19, 20] suggest increasing the daily dose of DAP. Clinical experience with a dose >6 mg/kg is limited, but data reported to date suggest that DAP is safe and well-tolerated [20–22]. In this report, we present our center’s experience with high-dose DAP for empirical treatment of PVGI during the very crucial post-operative period, and as treatment adapted to microbiological results. Methods The present study was retrospectively conducted from January VX809 2008 to December 2010 and included all patients treated with DAP for PVGI at our regional referral centers for these infections (University Hospital of Lille, Lille, France and Dron Hospital, Tourcoing, France). The objective of this study was to evaluate the safety of DAP at daily dosages >8 mg/kg in patients with PVGI. This study was approved by the institutional review boards

of Dron Hospital and the University Hospital of Lille. All patients included in this study were informed and gave their consent. As in our previous studies [3], as there is no standard definition XL184 manufacturer for diagnosis of definite or suspected PVGI, we used criteria proposed by FitzGerald et al. [1]. A patient was considered as suffering Sulfite dehydrogenase from clear-cut PVGI if at least two of the following three criteria were present: (a) positive bacterial culture of intraoperative

specimens or blood samples (for potentially contaminant bacteria, such as coagulase-negative staphylococci, Propionibacterium acnes, or corynebacteria, at least two intraoperative specimens or blood samples or at least one intraoperative specimen and one blood culture were required); (b) clinical signs of infection in the area of the prosthesis; (c) biological or other radiological signs of infection (perigraft air or fluid persisting for more than 8 weeks post-operatively; abscess). Each case of definite infection was classified as early-onset infection when occurring within 4 months after surgery or as late-onset infection when occurring more than 4 months after surgery. PVGI or stent infection was suspected when bacteremia involving a site other than the surgical site occurred in the early post-operative period (within 4 weeks of graft or stent implantation) [23, 24]. PVGI was documented only by intraoperative or blood samples. Superficial samples were excluded. Multiple intraoperative samples were RG7420 cell line cultured on blood agar plates with standard aerobic and anaerobic methods. Antibiotic susceptibility patterns were interpreted in accordance with recommendations of the “Comité de l’Antibiogramme de la Société Française de Microbiologie” [25].

What I saw was different from all I had seen in my own country, i

What I saw was different from all I had seen in my own country, in the US and in Australia. After the Soviet Union, Japan was another different world. I had some papers with Kazuo IWP-2 ic50 Shibata and young Japanese collegues (Inoue et al. 1978; Kobayashi et al. 1979a, b). Fig. 4 Kazuo

Shibata with Secretary Asayo Suzuki in 1965, SAR302503 clinical trial courtesy Asayo Iino, Tokyo, formerly Asayo Suzuki Kazuo has my gratitude and my great respect for his tolerance of the foreigner. I had been slow to understand him. When I left, I was, possibly, still a democrat, but subsequent experiences in my own country made me adopt much of what I had learnt in Japan. I had understood that loneliness is often a price to be paid for success. As another result

of my Japanese sabbatical, Yoshichika Kobayashi and Tetsuro Mimura came as postdocs to my laboratories in Düsseldorf and later to Würzburg. Kozi Asada came as Humboldt-prize winner. All of the Japanese collegues I had contact with were dedicated scientists, possessed by the Samurai spirit (see e.g., Mimura et al. 1990; Kobayashi and Heber 1995; Asada et al. 1993). They were followed by Chinese postdocs (see e.g., Ye and Heber 1984; Yin et al. 1990; Wu et al. 1991). University STA-9090 cost of Würzburg In 1978, the possibility arose to make a change once again. I received an offer to go to Würzburg as head of the chair of Botany I of the University. One hundred years earlier, Professor Julius von click here Sachs had established plant physiology there as an internationally accepted field of botanical research. Otto Lange, which whom I had visited the Soviet Union in 1962, headed the chair of Botany II. He had become a renowned ecologist (Fig. 5). The possibility of co-operation with him influenced my decision. I accepted and left the Rhineland for Frankonia in the North of

Bavaria. At the University of Würzburg I remained in a position of C4-Professor and, later, as speaker of a Sonderforschungsbereich (SFB) in which several institutes of biology and chemistry combined their research efforts until I retired officially in 1996. Intermittently, I managed to escape for a time when extended professorial and administrative duties of a large chair threatened to weigh me down. David Walker, by then head of the Robert Hill Institute of the University of Sheffield (Fig. 6), had arranged a Fellowship of the Royal Society which gave me the opportunity to go to Sheffield when life in Würzburg became intolerable. There, I could engage in experimentation. An alternative possibility for escape was provided by Roland Douce and Richard Bligny at the University of Grenoble in France. Work in the French alps led to several papers (Bligny et al. 1997 and other papers). The French university possessed a well-equipped alpine ecological station at the Col du Lautaret in the Alps which I could visit for experimental work on mountain plants as often as I wished. Fig.

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